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yyaE [2019-06-19 12:23:26]
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yyaE [2019-06-19 12:23:26]

similar to formate dehydrogenase
locus
BSU40930
pI
5.16
mw
73.75 kDa
protein length
667 aa Sequence Blast
gene length
2004 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.1|Electron transport and ATP synthesis] → [category|SW 2.1.4|Electron transport/ other/ based on similarity]

    • Gene

    Coordinates
    4,201,070 → 4,203,073

    The protein

    Paralogous protein(s)

  • [protein|628CCADB3C9A5F8A128C44ADE1DFDC2FC6B3CD01|YoaE]

    • [SW|Cofactors]

  • Fe-S cluster [pubmed|29292548]

    • Structure

  • [PDB|2VPW] (from Thermus thermophilus, 26% identity) [pubmed|18536726]

    • Expression and Regulation

    Operons

    genes
    [gene|BD162A17E5F3F9AB49E478CE72D0FE92D82E6673|yyzM]-[gene|FEE1952DFA3D6A5E2DC108B3B203B526642E2C68|yyaE]-[gene|C0F5FAD6DF89DA9E0FFC8F888D7CED6AA42D9C73|yyaF]-[gene|9D25B8F4579C41E77AE9CDD18CAD6DA37F3DD0A2|rpsF]-[gene|8DE39680CA7663803A107066FBE9AFFCC77DB72A|ssbA]-[gene|C0B926F1134A7A3FEEC886F9AF67F694C8E0C089|rpsR]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B870 (yyaE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1869 NBRP B. subtilis, Japan]
  • BKE40930 (Δ[gene|FEE1952DFA3D6A5E2DC108B3B203B526642E2C68|yyaE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGCCGTCTTCTCCTTAC, downstream forward: _UP4_TAATCAAAGGGATTGGCAAG
  • BKK40930 (Δ[gene|FEE1952DFA3D6A5E2DC108B3B203B526642E2C68|yyaE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGCCGTCTTCTCCTTAC, downstream forward: _UP4_TAATCAAAGGGATTGGCAAG

    • References

    Research papers

  • 18536726